PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.71
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 209aa    MW: 23777.5 Da    PI: 4.8267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.71genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-1874123355
                          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  evm.model.supercontig_44.71  74 YRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFSMRG 123
                                  9*******.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1373123IPR001471AP2/ERF domain
SMARTSM003801.3E-3773137IPR001471AP2/ERF domain
PROSITE profilePS5103223.19673131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3073132IPR001471AP2/ERF domain
PRINTSPR003673.1E-137485IPR001471AP2/ERF domain
CDDcd000181.07E-1974132No hitNo description
SuperFamilySSF541716.02E-2274133IPR016177DNA-binding domain
PRINTSPR003673.1E-13113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNSSWNSDFS SGSPDSLSFE NTSLPFNEND SEEMLLYGLI AEANHESSES TYSNMMIKEE  60
EVSSVEDPKQ ERSYRGVRRR PWGKFAAEIR DSTRHGIRVW LGTFDSAEAA ALAYDQAAFS  120
MRGSSAILNF PVERVEESLR EMKCNYEEGC SPVVALKRKH SMRRKMCNRK KRERDVRIEN  180
VVVFEDLGAD YLEQLLTSSS SSEITMPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2770132264ATERF1
3gcc_A2e-2770132264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156171KRKHSMRRKMCNRKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4537040.0KM453704.1 Carica papaya AP2/ERF transcription factor ERF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035093.15e-97Ethylene-responsive transcription factor 1B
SwissprotQ8LDC84e-85ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0K0NLE41e-153A0A0K0NLE4_CARPA; AP2/ERF transcription factor ERF7
STRINGPOPTR_0010s08300.11e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-75ethylene response factor 1